#!/bin/bash
 
#$ -cwd
#$ -j y
#$ -S /bin/bash
#$ -pe mpi 1
#$ -V 
 
EXECUTABLE=/opt/Bio/ncbi/bin/blastall
NUMTHREADS=2
DATABASE=$HOME/blast/db/nr
INPUT_FILE=./input.fas
RESULTS_FILE=./results.out.$JOB_ID

echo "Starting Program at: " `date` 
time $EXECUTABLE -p blastp -d $DATABASE -a $NUMTHREADS -i $INPUT_FILE -o $RESULTS_FILE
echo "Program Terminated Normally at: " `date`